Discover and read the best of Twitter Threads about #sublineages

Most recents (18)

#SARSCoV2 #Omicron family quickly swells to 900+ #sublineages!

Add another 203+ recombinant lineages (w/ Omicron partner)

Currently, we are watching "Omicron" Great-Great-Great grand kids.. especially the recombinant families..

Recombinants have outcompeted others globally! Image
Expanding XBB family

Welcome to XBB.1.5 grand/great-grand kids

EM.1 (XBB.1.5.7.1)
EK.1 (XBB.1.5.13.1)
EK.2(XBB.1.5.13.2)
EK.2.1(XBB.1.5.13.2.1)
EK.3(XBB.1.5.13.3)
EL.1(XBB.1.5.14.1)
FD.1(XBB.1.5.15.1)
FD.1.1(XBB.1.5.15.1.1)
EU.1(XBB.1.5.26.1)
EU.1.1(XBB.1.5.26.1.1)
Simplified Phylogenetic tree from @CiscoRucinski to visualize XBB family (and other Lineages)

observablehq.com/@ciscorucinski…
Read 7 tweets
#Omicron family swells to 653+ #sublineages!

Currently, we are watching "Omicron" Great-Great-Great grand kids.. especially the recombinant family members

Expected to outcompete other circulating Omicrons including Omicron-BQ*

XBB.1.5* poised to take over North America soon! Image
BQ* family swells to 73
New members CZ.1, DN.1, DN.1.1, DK.1, DP.1, CW.1, DM.1, among others

Source: @PangoNetwork Image
Recombinant lineage watch list Image
Read 5 tweets
Tracking #BA4* and #BA5* #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Sequence count: 56,087
BA.4*: 17,971
BA.5*: 38,116

Tracker: public.tableau.com/app/profile/ra…
Updated 6/25/2022
Status of #BA4/#BA5 in #Europe - #15DayTrends

BA.5 is surging ahead...
Read 8 tweets
Tracking #BA4 and #BA5 #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Sequence count: 13,079

Tracker: public.tableau.com/app/profile/ra…
Updated 6/07/2022
BA.4/5 is rapidly🔥 increasing in the #UnitedStates!

Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Portugal and #Germany
Read 9 tweets
Tracking #BA4 and #BA5 #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Sequence count: 11,778

Tracker: public.tableau.com/app/profile/ra…

Updated 6/06/2022
BA.4/5 is quickly increasing in #UnitedStates!

Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Portugal and #Germany
Tracking #BA4/#BA5 in #Asia

Hotspots:
BA.4 - #Israel, #Singapore, #Japan, #HongKong, #India
BA.5- #Israel, #Singapore, #India, #Japan,
Read 9 tweets
Tracking #BA4 and #BA5 #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Sequence count: 10,779

Tracker: public.tableau.com/app/profile/ra…

Updated 6/05/2022
BA.4/5 is quickly increasing in #UnitedStates!

Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Germany and #Portugal
Tracking #BA4/#BA5 in #Asia

Hotspots:
BA.4 - #Israel, #Singapore, #Japan, #HongKong, #India
BA.5- #Israel, #Singapore, #India, #Japan,
Read 9 tweets
Tracking #BA4 and #BA5 #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Sequence count: 10,658

Tracker: public.tableau.com/app/profile/ra…
Updated 6/04/2022
BA.4/5 is quickly increasing in #UnitedStates!

Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Germany and #Portugal Image
Tracking #BA4/#BA5 in #Asia

Hotspots:
BA.4 - #Israel, #Singapore, #Japan, #HongKong, #India
BA.5- #Israel, #Singapore, #Japan, #India Image
Read 9 tweets
Tracking #BA4 and #BA5 #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Tracker: public.tableau.com/app/profile/ra…

Updated 5/22/2022
Tracking #BA4/#BA4 in #Asia and #Oceania

Hotspots: #Israel, #Hongkong, #NewSouthWales (#Australia), #Singapore
Emerging Hotspots: #India
#NewZealand (MIQ facility)
Read 6 tweets
Tracking #BA4 and #BA5 #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Tracker: public.tableau.com/app/profile/ra…

Updated 5/21/2022
Tracking #BA4/#BA4 in #Asia and #Oceania

Hotspots: #Israel, #Hongkong, #NewSouthWales (#Australia), #Singapore
Emerging Hotspots: #India
#NewZealand (MIQ facility)
Read 7 tweets
Tracking #BA4 and #BA5 #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Tracker: public.tableau.com/app/profile/ra…

Updated 5/20/2022
Tracking #BA4/#BA4 in #Asia and #Oceania

Hotspots: #Israel, #Hongkong, #NewSouthWales (#Australia), #Singapore
Emerging Hotspots: #India ImageImage
Read 7 tweets
Tracking #BA4 and #BA5 #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Tracker: public.tableau.com/app/profile/ra…

Updated 5/02/2022
Tracking #BA4/#BA5 in #Europe
Tracking #BA4/#BA5 in #USA
Read 5 tweets
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

24.63% BA.2.12.1, <- Spike:L452Q
17.54% BA.2,
14.93% BA.2.9,
12.00% BA.2.12,
11.38% BA.2.10,
9.55% BA.2.3, and
2.35% BA.1.1

Tracker (by State): tinyurl.com/mryj4uu7

#OmicronUpdates 05/01/22
#OmicronVariantUpdates #UnitedStates 05/01/22

Top circulating #sublineages: BA.2.12.1, BA.2*, BA.2.9, BA.2.12, BA.2.10, BA.2.3, and BA.1.1

* includes recently designated BA.2.x.y
Read 5 tweets
Tracking #BA4 and #BA5 #Omicron #Sublineages over time

This tracker includes only sequences with signature mutations👇

Tracker: public.tableau.com/app/profile/ra…

Updated 5/01/2022
Tracking #BA4 and #BA5 in #NorthAmerica
This tracker doesn't include a suspected BA.4 sequence from #Maryland

Reason: #Amplicon #Dropout in the key region containing signature spike aa 452/486 which partly defines this lineage.
Read 6 tweets
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

23.39% BA.2.12.1, <- Spike:L452Q
19.16% BA.2,
14.85% BA.2.9,
12.25% BA.2.10,
10.79% BA.2.12,
9.43% BA.2.3 and
2.33% BA.1.1

Tracker (by State): tinyurl.com/mryj4uu7

#OmicronUpdates 04/30/22
#OmicronVariantUpdates #UnitedStates 04/30/22

Top circulating #sublineages: BA.2.12.1, BA.2*, BA.2.9, BA.2.10, BA.2.12, BA.2.3, and BA.1.1

* includes recently designated BA.2.x.y
Sequence count by Division - #UnitedStates 04/30/22

#NewYork, #NorthCarolina, #Arizona, #California and #Connecticut have submitted >125 sequences with sample collection dates between April 15 to April 30, 2022.
Read 8 tweets
#COVID19 #VariantDashboard - #UnitedStates

BA.2.12.1 is the top circulating lineage in the USA

Its not the dominating strain yet by looks like it will get there in 2-3 weeks!

Tracker (by State): tinyurl.com/mryj4uu7

#OmicronUpdates 04/29/22
#COVID19 #VariantDashboard

TOP lineages (15-DAY TRENDS) - #UnitedStates:

23.76% BA.2.12.1, <-S:L452Q
19.22% BA.2,
15.47% BA.2.9,
11.81% BA.2.10,
10.45% BA.2.12,
9.31% BA.2.3 and
2.64% BA.1.1

Tracker (by State): tinyurl.com/mryj4uu7

#OmicronUpdates 04/28/22 Image
*Typo corrected: Its not the dominating strain yet *but* looks like it will get there in 2-3 weeks!
Read 13 tweets
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):
27.06% BA.2,
15.80% BA.2.9,
13.04% BA.2.12.1, <---Spike #L452Q
12.27% BA.2.12,
8.97% BA.2.3,
8.13% BA.1.1, and
8.06% BA.2.10

Tracker (by State): tinyurl.com/mryj4uu7

#OmicronUpdates 04/18/22
#OmicronVariantUpdates #UnitedStates 04/19/22

Top circulating #sublineages: BA.2*, BA.2.9, BA.2.12.1, BA.2.12, BA.2.3, BA.1.1, and BA.2.10

* includes recently designated BA.2.x.y
Sequence count by Division - #UnitedStates 04/19/22

#NewYork, #California, ##Texas, #Illinois, #NewJersey and #Washington have submitted >200 sequences with sample collection dates between April 04 to April 19, 2022.
Read 5 tweets
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):
27.06% BA.2,
15.54% BA.2.9,
12.50% BA.2.12.1, <-- Spike L452Q!
11.73% BA.2.12,
9.49% BA.2.3,
8.43% BA.1.1, and
8.43% BA.2.10

Tracker (by State): tinyurl.com/mryj4uu7

#OmicronUpdates 04/18/22
#OmicronVariantUpdates #UnitedStates 04/18/22

Top circulating #sublineages: BA.2*, BA.2.9, BA.2.12.1, BA.2.12, BA.2.3, BA.1.1, and BA.2.10

* includes recently designated BA.2.x.y
Sequence count by Division - #UnitedStates 04/18/22

#NewYork, #California, ##Texas, #Illinois, #Washington, #NewJersey and #Florida have submitted >200 sequences with sample collection dates between April 03 to April 18, 2022.
Read 5 tweets
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):
23.33% BA.2,
16.87% BA.2.9,
12.70% BA.2.10,
10.87% BA.2.3,
9.68% BA.2.12,
9.56% BA.2.12.1,
8.58% BA.1.1, and
1.72% BA.2.5

Tracker (by State): tinyurl.com/mryj4uu7

#OmicronUpdates 04/17/22 Image
#OmicronVariantUpdates #UnitedStates 04/17/22

Top circulating #sublineages: BA.2*, BA.2.9, BA.2.10, BA.2.3, BA.2.12, BA.2.12.1, and BA.1.1

* includes recently designated BA.2.x.y Image
Sequence count by Division - #UnitedStates 04/17/22

#NewYork, #California, #Washington, #NewJersey, #Colorado and #WashingtonDC have submitted >100 sequences with sample collection dates between April 2st to April 17, 2022. Image
Read 5 tweets

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